This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
LabSIR Key of A Simple SIR (Susceptible, Infected, Recovered) Example
This is the second in a series of models that explore the dynamics of and policy impacts on infectious diseases. This basic SIR model explores the impact of a simple test and isolate policy. The first model can be found here.
Future Learn Basic SIR Model with Sample Testing
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.
With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.
We start with an SIR model, such as that featured in the MAA model featured in
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure
With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.
Resources:
- http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb
- https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Clone of Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death
Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.
With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.
We start with an SIR model, such as that featured in the MAA model featured in
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure
With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.
Resources:
- http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb
- https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death
This is an example of an SIR (Susceptible, Infected, Recovered) model that has been re-parameterized down to the bare minimum, to illustrated the dynamics possible with the fewest number of parameters.
We're rescaled this SIR model, so that time is given in infection rate-appropriate time units, "rates" are now ratios of rates (with infectivity rate in the denominator), and populations are considered proportions (unfortunately InsightMaker doesn't function properly if I give them all values from 0 to 1, which sum to 1 -- so, at the moment, I give them values that sum to 100, and consider the results percentages).
The new display includes the asymptotics: the three sub-populations will tend to fixed values as time goes to infinity; the infected population goes to zero if the recovery rate is greater than the infectivity rate -- i.e., the disease dies out.
Note the use of a "ghost" stock (for Total Population), which I think is a pretty cool idea. It cuts down on the number of arcs in the model graph.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-rescaled.nb
Clone of A Sleek, non-dimensionalized SIR (Susceptible, Infected, Recovered) model
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
A spatially aware, agent based model of disease spread. There are three classes of people: susceptible (healthy), infected (sick and infectious), and recovered (healthy and temporarily immune).
@LinkedIn, Twitter, YouTube
Clone of Spatially Aware SIR Disease Model
Modelo SIR seguindo tutorial
SIR - tutorial
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple Infection-only SIR (Susceptible, Infected, Recovered) Example
This is an example of an SIR (Susceptible, Infected, Recovered) model that has been re-parameterized down to the bare minimum, to illustrated the dynamics possible with the fewest number of parameters.
We're rescaled this SIR model, so that time is given in infection rate-appropriate time units, "rates" are now ratios of rates (with infectivity rate in the denominator), and populations are considered proportions (unfortunately InsightMaker doesn't function properly if I give them all values from 0 to 1, which sum to 1 -- so, at the moment, I give them values that sum to 100, and consider the results percentages).
The new display includes the asymptotics: the three sub-populations will tend to fixed values as time goes to infinity; the infected population goes to zero if the recovery rate is greater than the infectivity rate -- i.e., the disease dies out.
Note the use of a "ghost" stock (for Total Population), which I think is a pretty cool idea. It cuts down on the number of arcs in the model graph.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-rescaled.nb
Clone of A Sleek, non-dimensionalized SIR (Susceptible, Infected, Recovered) model
This is a simple example of (part of a) simple SIR (Susceptible, Infected, Recovered) model, suggested by De Vries, et al. in A Course in Mathematical Biology.
They wanted to illustrate the comparative behavior of differential equations and discrete difference equations. We know that differential equations are generally solved numerically by discretizing them, so that the comparison is a little bit rigged....
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel-w-discrete-version.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) without infection
Thanks to
https://insightmaker.com/insight/25229/SIR-model-with-stochastic-events
for this example of adding stochasticity to the SIR model. "A simple extension of the tutorial SIR example, adding in Poisson events for infection and recovery. There is one macro, RandPoissonStep(rate)... to simulate Poisson processes."
I've tried to add in the infection step, as well as turn numbers into integers (without much luck). But it certainly has some interesting dynamics! I've also added in a phase plane graphic.
Clone of SIR model with stochastic events
Modelo epidemiológico simples
SIR: Susceptíveis - Infectados - Recuperados
Dados iniciais do Brasil em 04 Abr 2020
Fonte:
https://www.worldometers.info/coronavirus/country/brazil/
Clone of Modelo SIR simples - Covid-19
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is a first example of a simple SIR (Susceptible, Infected, Recovered) model.
There are three pools of individuals: those who are infected (without them, no disease!), the pool of those who are at risk (susceptible), and the recovered -- who may lose their immunity and become susceptible again.
A comparable model in Mathematica is available at
http://www.nku.edu/~longa/classes/2018spring/mat375/mathematica/SIRModel.nb
Clone of A Simple SIR (Susceptible, Infected, Recovered) Example
This is the first in a series of models that explore the dynamics of and policy impacts on infectious diseases. This basic model divides the population into three categories -- Susceptible (S), Infectious (I) and Recovered (R).
Press the simulate button to run the model and see what happens at different values of the Reproduction Number (R0).
The second model that includes a simple test and isolate policy can be found here.
Өз.жұмыс жүйелік динамика
Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.
With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.
We start with an SIR model, such as that featured in the MAA model featured in
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure
With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.
Resources:
- http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb
- https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model
Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death
Thanks to
https://insightmaker.com/insight/25229/SIR-model-with-stochastic-events
for this example of adding stochasticity to the SIR model. "A simple extension of the tutorial SIR example, adding in Poisson events for infection and recovery. There is one macro, RandPoissonStep(rate)... to simulate Poisson processes."
I've tried to add in the infection step, as well as turn numbers into integers (without much luck). But it certainly has some interesting dynamics! I've also added in a phase plane graphic.
Clone of SIR model with stochastic events
