A model of the exponential growth and collapse of E. coli .
Bacteria Biology Exponential Growth Microbiology Science Collapse
A model of the exponential growth and collapse of E. coli.
Clone of E coli life cycle model
William Hahn
An attempt to model the allegation that over-consumption of calcium causes osteoporosis.
Biology
An attempt to model the allegation that over-consumption of calcium causes osteoporosis.
Calcium and Osteoporosis
Ash Moran
Bipolar II treatment modeling using Van der Pol-like oscillators. In this simulation an afflicted individual with Bipolar II disorder is put to treatment after 20 months the calibration of the medicine or treatment he recieves is such that it simulates the natural cycles of a "normal being". You ca
Psychology System Zoo Science Biology Physics
Bipolar II treatment modeling using Van der Pol-like oscillators.

In this simulation an afflicted individual with Bipolar II disorder is put to treatment after 20 months the calibration of the medicine or treatment he recieves is such that it simulates the natural cycles of a "normal being". You can note by manipulating the parameters that sometimes too much treatment disrupts equilibria. Also note that in the state diagrams there are 2 limit cycles, the lower one being the healthiest as there are less changes.
Bipolar II dynamics
Eduardo Enrique Escamilla
Insight diagram
Biology Food Chain FOOD WEB
BIO 110 Food Web
Tawanda Boone
WIP Based on Carlos E Perez twitter diagrams and Paul Cisek 2019 paper and talks including explore and exploit behaviours
Brain The Body And Self Personality Biology Behavior Explore Exploit
WIP Based on Carlos E Perez twitter diagrams and Paul Cisek 2019 paper and talks including explore and exploit behaviours
Brain control circuit evolution
Geoff McDonnell
Migration Rate​https://www.indexmundi.com/russia/net_migration_rate.html https://www.cia.gov/library/publications/the-world-factbook/fields/2112.html
Population Biology
Migration Rate​https://www.indexmundi.com/russia/net_migration_rate.html

https://www.cia.gov/library/publications/the-world-factbook/fields/2112.html

Russia Population Growth
Adelaide S
This model is a basic model on how the glucose level in blood is maintained.
Systems Thinking Biology
This model is a basic model on how the glucose level in blood is maintained.

Glucose English
Wouter van Joolingen
Insight diagram
Biology Food Webs
Clone of Food Web on Autumn Olive
Emmalee Johnson
​Physical meaning of the equations The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations: 1. The prey population finds ample food at all times. 2. The food supply of the predator population depends entirely on the
Education Chaos Ecology Biology Population
​Physical meaning of the equations
The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations:

1. The prey population finds ample food at all times.
2. The food supply of the predator population depends entirely on the size of the prey population.
3. The rate of change of population is proportional to its size.
4. During the process, the environment does not change in favour of one species and genetic adaptation is inconsequential.
5. Predators have limitless appetite.
As differential equations are used, the solution is deterministic and continuous. This, in turn, implies that the generations of both the predator and prey are continually overlapping.[23]

Prey
When multiplied out, the prey equation becomes
dx/dt = αx - βxy
 The prey are assumed to have an unlimited food supply, and to reproduce exponentially unless subject to predation; this exponential growth is represented in the equation above by the term αx. The rate of predation upon the prey is assumed to be proportional to the rate at which the predators and the prey meet; this is represented above by βxy. If either x or y is zero then there can be no predation.

With these two terms the equation above can be interpreted as: the change in the prey's numbers is given by its own growth minus the rate at which it is preyed upon.

Predators

The predator equation becomes

dy/dt =  - 

In this equation, {\displaystyle \displaystyle \delta xy} represents the growth of the predator population. (Note the similarity to the predation rate; however, a different constant is used as the rate at which the predator population grows is not necessarily equal to the rate at which it consumes the prey). {\displaystyle \displaystyle \gamma y} represents the loss rate of the predators due to either natural death or emigration; it leads to an exponential decay in the absence of prey.

Hence the equation expresses the change in the predator population as growth fueled by the food supply, minus natural death.


Clone of Prey&Predator
Eleazar Puente
Questo modello usa un'altra ipotesi per la natura (e durata della fase lag). La popolazione N è composta da una frazione di cellule che non crescono NG e una di cellule che crescono immediatamente alla massima velocità, G. Il rapporto fra le due frazioni determina la durata della fase lag
Biology Microbiology
Questo modello usa un'altra ipotesi per la natura (e durata della fase lag). La popolazione N è composta da una frazione di cellule che non crescono NG e una di cellule che crescono immediatamente alla massima velocità, G. Il rapporto fra le due frazioni determina la durata della fase lag
Heterogeneous Population Model
Eugenio Parente
14
Il modello dinamico di Baranyi e Roberts per la curva di crescita di microrganismi (Baranyi, J., Roberts, T. (1994). A dynamic approach to predicting bacterial growth in food International journal of food microbiology  23(), 1 - 18). __ E' un modello dinamico che assume che la fase lag sia dovut
Microbiology Bacterial Growth Predictive Microbiology Richards Curves Biology
Il modello dinamico di Baranyi e Roberts per la curva di crescita di microrganismi (Baranyi, J., Roberts, T. (1994). A dynamic approach to predicting bacterial growth in food International journal of food microbiology  23(), 1 - 18).

__
E' un modello dinamico che assume che la fase lag sia dovuto all'accumulo di un composto essenziale (la cui quantità iniziale riflette lo stato iniziale delle cellule nell'ambiente E1, da cui provengono), secondo una cinetica di primo ordine, ad una velocità che dipende dall'ambiente E2. Il modello è lievemente modificato rispetto all'originale, per evitare che la quantità del prodotto essenziale tenda all'infinito. 
Clone of D-model (curve di Richards)
Veronica Minici
Insight diagram
Biology
Nitrogen cycle
Hans Ire
Insight diagram
Biology
Wolf - Moose Predator Prey Model
Brooke Heinonen
​Predator-prey models are the building masses of the bio-and environments as bio masses are become out of their asset masses. Species contend, advance and scatter essentially to look for assets to support their battle for their very presence. This model is designed to represent the moose and wolf
Population Chaos Ecology Education Biology

​Predator-prey models are the building masses of the bio-and environments as bio masses are become out of their asset masses. Species contend, advance and scatter essentially to look for assets to support their battle for their very presence. This model is designed to represent the moose and wolf population on Isle Royal. The variables include moose population, wolf population, moose birth rate, wolf birth rate, moose death proportionality constant, and wolf death proportionality constant. This model was adapted from https://insightmaker.com/insight/3A0dqQnXXh8zxWJtkwwAH9/Lotka-Volterra-Model-Prey-Predator-Simulation.

 Looking at Lotka-Volterra Model:

The well known Italian mathematician Vito Volterra proposed a differential condition model to clarify the watched increment in predator fish in the Adriatic Sea during World War I. Simultaneously in the United States, the conditions contemplated by Volterra were determined freely by Alfred Lotka (1925) to portray a theoretical synthetic response wherein the concoction fixations waver. The Lotka-Volterra model is the least complex model of predator-prey communications. It depends on direct per capita development rates, which are composed as f=b−py and g=rx−d. 

A detailed explanation of the parameters:

  • The parameter b is the development rate of species x (the prey) without communication with species y (the predators). Prey numbers are reduced by these collaborations: The per capita development rate diminishes (here directly) with expanding y, conceivably getting to be negative. 
  • The parameter p estimates the effect of predation on x˙/x. 
  • The parameter d is the death rate of species y without connection with species x. 
  • The term rx means the net rate of development of the predator population in light of the size of the prey population.

Reference:

http://www.scholarpedia.org/article/Predator-prey_model

https://insightmaker.com/insight/3A0dqQnXXh8zxWJtkwwAH9/Lotka-Volterra-Model-Prey-Predator-Simulation

Lotka-Volterra Model: Moose-Wolf Simulation
Emily Blackaby
​Physical meaning of the equations The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations: 1. The prey population finds ample food at all times. 2. The food supply of the predator population depends entirely on the
Education Biology Chaos Ecology Population
​Physical meaning of the equations
The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations:

1. The prey population finds ample food at all times.
2. The food supply of the predator population depends entirely on the size of the prey population.
3. The rate of change of population is proportional to its size.
4. During the process, the environment does not change in favour of one species and genetic adaptation is inconsequential.
5. Predators have limitless appetite.
As differential equations are used, the solution is deterministic and continuous. This, in turn, implies that the generations of both the predator and prey are continually overlapping.[23]

Prey
When multiplied out, the prey equation becomes
dx/dt = αx - βxy
 The prey are assumed to have an unlimited food supply, and to reproduce exponentially unless subject to predation; this exponential growth is represented in the equation above by the term αx. The rate of predation upon the prey is assumed to be proportional to the rate at which the predators and the prey meet; this is represented above by βxy. If either x or y is zero then there can be no predation.

With these two terms the equation above can be interpreted as: the change in the prey's numbers is given by its own growth minus the rate at which it is preyed upon.

Predators

The predator equation becomes

dy/dt =  - 

In this equation, {\displaystyle \displaystyle \delta xy} represents the growth of the predator population. (Note the similarity to the predation rate; however, a different constant is used as the rate at which the predator population grows is not necessarily equal to the rate at which it consumes the prey). {\displaystyle \displaystyle \gamma y} represents the loss rate of the predators due to either natural death or emigration; it leads to an exponential decay in the absence of prey.

Hence the equation expresses the change in the predator population as growth fueled by the food supply, minus natural death.


Clone of Prey&Predator
Peter Hungyu Lee
Stock flow map of Immune System Cell type proliferation and differentiation, migration and circulation from Figs 1.3, 8.14 and 8.33 from Janeway's Immunobiology see Insight . Does not include cell death, interactions or inhibitory and promoting factors
Biology Immunology The Body and Self Biomedical
Stock flow map of Immune System Cell type proliferation and differentiation, migration and circulation from Figs 1.3, 8.14 and 8.33 from Janeway's Immunobiology see Insight . Does not include cell death, interactions or inhibitory and promoting factors
Immune System Development
Geoff McDonnell
Theories and models of heredity from Rethinking heredity, again R. Bonduriansky 2012 article
Biomedical The Body And Self Genetics Evolution Biology
Theories and models of heredity from Rethinking heredity, again R. Bonduriansky 2012 article
Heredity Theories and Models
Geoff McDonnell
This simulation shows how plant, deer and wolf populations impact each other in a deciduous forest ecosystem.
Environmental Science Biology Population Dynamics Ecology
This simulation shows how plant, deer and wolf populations impact each other in a deciduous forest ecosystem.
Plant, Deer and Wolf Population Dynamics G-IV Intro
Kevin Collins
8
Un modello minimo per la crescita esponenziale di una popolazione microbica, con popolazione massima limitata
Predictive Microbiology Richards Curves Bacterial Growth Microbiology Biology
Un modello minimo per la crescita esponenziale di una popolazione microbica, con popolazione massima limitata
Clone of Crescita esponenziale, modello logistico con esponente (curve di Richards)
Michele Faraldo
​Physical meaning of the equations The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations: 1. The prey population finds ample food at all times. 2. The food supply of the predator population depends entirely on the
Chaos Education Ecology Biology Population
​Physical meaning of the equations
The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations:

1. The prey population finds ample food at all times.
2. The food supply of the predator population depends entirely on the size of the prey population.
3. The rate of change of population is proportional to its size.
4. During the process, the environment does not change in favour of one species and genetic adaptation is inconsequential.
5. Predators have limitless appetite.
As differential equations are used, the solution is deterministic and continuous. This, in turn, implies that the generations of both the predator and prey are continually overlapping.[23]

Prey
When multiplied out, the prey equation becomes
dx/dt = αx - βxy
 The prey are assumed to have an unlimited food supply, and to reproduce exponentially unless subject to predation; this exponential growth is represented in the equation above by the term αx. The rate of predation upon the prey is assumed to be proportional to the rate at which the predators and the prey meet; this is represented above by βxy. If either x or y is zero then there can be no predation.

With these two terms the equation above can be interpreted as: the change in the prey's numbers is given by its own growth minus the rate at which it is preyed upon.

Predators

The predator equation becomes

dy/dt =  - 

In this equation, {\displaystyle \displaystyle \delta xy} represents the growth of the predator population. (Note the similarity to the predation rate; however, a different constant is used as the rate at which the predator population grows is not necessarily equal to the rate at which it consumes the prey). {\displaystyle \displaystyle \gamma y} represents the loss rate of the predators due to either natural death or emigration; it leads to an exponential decay in the absence of prey.

Hence the equation expresses the change in the predator population as growth fueled by the food supply, minus natural death.


Clone of Prey&Predator
Chris-Daniel Krempels
Adapted from ​Fig 5.1 p102 From  Thompson's Mind in Life Book
Complexity Biology
Adapted from ​Fig 5.1 p102 From Thompson's Mind in Life Book
Self-Organization
Geoff McDonnell
Insight diagram
Student Naturalist Biology Science
Barbados Threadsnake Food Chain
Juliana Sanjean
​Physical meaning of the equations The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations: 1. The prey population finds ample food at all times. 2. The food supply of the predator population depends entirely on the
Biology Ecology Chaos Population Education
​Physical meaning of the equations
The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations:

1. The prey population finds ample food at all times.
2. The food supply of the predator population depends entirely on the size of the prey population.
3. The rate of change of population is proportional to its size.
4. During the process, the environment does not change in favour of one species and genetic adaptation is inconsequential.
5. Predators have limitless appetite.
As differential equations are used, the solution is deterministic and continuous. This, in turn, implies that the generations of both the predator and prey are continually overlapping.[23]

Prey
When multiplied out, the prey equation becomes
dx/dt = αx - βxy
 The prey are assumed to have an unlimited food supply, and to reproduce exponentially unless subject to predation; this exponential growth is represented in the equation above by the term αx. The rate of predation upon the prey is assumed to be proportional to the rate at which the predators and the prey meet; this is represented above by βxy. If either x or y is zero then there can be no predation.

With these two terms the equation above can be interpreted as: the change in the prey's numbers is given by its own growth minus the rate at which it is preyed upon.

Predators

The predator equation becomes

dy/dt =  - 

In this equation, {\displaystyle \displaystyle \delta xy} represents the growth of the predator population. (Note the similarity to the predation rate; however, a different constant is used as the rate at which the predator population grows is not necessarily equal to the rate at which it consumes the prey). {\displaystyle \displaystyle \gamma y} represents the loss rate of the predators due to either natural death or emigration; it leads to an exponential decay in the absence of prey.

Hence the equation expresses the change in the predator population as growth fueled by the food supply, minus natural death.


Clone of Prey&Predator
Ben Cope
​Physical meaning of the equations The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations: 1. The prey population finds ample food at all times. 2. The food supply of the predator population depends entirely on the
Ecology Biology Population Chaos Education
​Physical meaning of the equations
The Lotka–Volterra model makes a number of assumptions about the environment and evolution of the predator and prey populations:

1. The prey population finds ample food at all times.
2. The food supply of the predator population depends entirely on the size of the prey population.
3. The rate of change of population is proportional to its size.
4. During the process, the environment does not change in favour of one species and genetic adaptation is inconsequential.
5. Predators have limitless appetite.
As differential equations are used, the solution is deterministic and continuous. This, in turn, implies that the generations of both the predator and prey are continually overlapping.[23]

Prey
When multiplied out, the prey equation becomes
dx/dt = αx - βxy
 The prey are assumed to have an unlimited food supply, and to reproduce exponentially unless subject to predation; this exponential growth is represented in the equation above by the term αx. The rate of predation upon the prey is assumed to be proportional to the rate at which the predators and the prey meet; this is represented above by βxy. If either x or y is zero then there can be no predation.

With these two terms the equation above can be interpreted as: the change in the prey's numbers is given by its own growth minus the rate at which it is preyed upon.

Predators

The predator equation becomes

dy/dt =  - 

In this equation, {\displaystyle \displaystyle \delta xy} represents the growth of the predator population. (Note the similarity to the predation rate; however, a different constant is used as the rate at which the predator population grows is not necessarily equal to the rate at which it consumes the prey). {\displaystyle \displaystyle \gamma y} represents the loss rate of the predators due to either natural death or emigration; it leads to an exponential decay in the absence of prey.

Hence the equation expresses the change in the predator population as growth fueled by the food supply, minus natural death.


Clone of Prey&Predator
Mariane Kfoury