COVID-19 | Insight Maker

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus

Clone of SEIR Infectious Disease Model for COVID-19

Анастасия

Spring, 2020: in the midst of on-line courses, due to the pandemic of Covid-19.

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-4, we reproduce their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb
https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Clone of Clone of Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) with death

Анастасия

The SEIRS(D) model for the purpose of experimenting with the phenomena of viral spread. I use it for COVID-19 simulation.

Clone of SEIR - COVID-19 (v.1)

Imam Arif Hadi Pramono

SARS-CoV-19 spread in different countries

- please adjust variables accordingly

Italy

elderly population (>65): 0.228
estimated undetected cases factor: 4-11
starting population size: 60 000 000
high blood pressure: 0.32 (gbe-bund)
heart disease: 0.04 (statista)
free intensive care units: 3 100

Germany

elderly population (>65): 0.195 (bpb)
estimated undetected cases factor: 2-3 (deutschlandfunk)
starting population size: 83 000 000
high blood pressure: 0.26 (gbe-bund)
heart disease: 0.2-0.28 (herzstiftung)
free intensive care units: 5 880

France

elderly population (>65): 0.183 (statista)
estimated undetected cases factor: 3-5
starting population size: 67 000 000
high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
heart disease: 0.1-0.2 (oecd)
free intensive care units: 3 000

As you wish

numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key

Healthy: People are not infected with SARS-CoV-19 but could still get it
Infected: People have been infected and developed the disease COVID-19
Recovered: People just have recovered from COVID-19 and can't get it again in this stage
Dead: People died because of COVID-19
Immune: People got immune and can't get the disease again
Critical recovery percentage: Chance of survival with no special medical treatment

Clone of Clone of SARS-CoV-19 model

Merlin Majano

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus

Clone of Clone of Clone of Clone of Clone of Clone of Clone of Clone of SEIR Infectious Disease Model for COVID-19

juan jose

3

This model calculates and demonstrates the possible spread of COVID-19 through an agent-based map. It shows the timeline of a healthy individual being infected to recovery.

COVID Model

Justine Grace Jumawan

A sample model for class discussion modeling COVID-19 outbreaks and responses from government with the effect on the local economy. Govt policy is dependent on reported COVID-19 cases, which in turn depend on testing rates less those who recover

Assumptions

Govt policy reduces infection and economic growth in the same way.

Govt policy is trigger when reported COVID-19 case are 10 or less.

A greater number of COVID-19 cases has a negative effect on the economy. This is due to economic signalling that all is not well.

Interesting insights

Higher testing rates seem to trigger more rapid government intervention, which reduces infectious cases. The impact on the economy though of higher detected cases though is negative.

Clone of Burnie COVID-19 outbreak demo model version 2

ching tung li

A model shows the System Dynamics that represent the COVID-19 cases in Brgy. Rio Tuba, Bataraza, Palawan as of the month of May 2022.

Ph_Covid19SDM_RevalynSalut

Revalyn Salut

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus

Clone of SEIR Infectious Disease Model for COVID-19

Carlos Morocho

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus

Clone of SEIR Infectious Disease Model for COVID-19

Jingyi Qiu

SARS-CoV-19 spread in different countries

- please adjust variables accordingly

Italy

elderly population (>65): 0.228
estimated undetected cases factor: 4-11
starting population size: 60 000 000
high blood pressure: 0.32 (gbe-bund)
heart disease: 0.04 (statista)
free intensive care units: 3 100

Germany

elderly population (>65): 0.195 (bpb)
estimated undetected cases factor: 2-3 (deutschlandfunk)
starting population size: 83 000 000
high blood pressure: 0.26 (gbe-bund)
heart disease: 0.2-0.28 (herzstiftung)
free intensive care units: 5 880

France

elderly population (>65): 0.183 (statista)
estimated undetected cases factor: 3-5
starting population size: 67 000 000
high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
heart disease: 0.1-0.2 (oecd)
free intensive care units: 3 000

As you wish

numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key

Healthy: People are not infected with SARS-CoV-19 but could still get it
Infected: People have been infected and developed the disease COVID-19
Recovered: People just have recovered from COVID-19 and can't get it again in this stage
Dead: People died because of COVID-19
Immune: People got immune and can't get the disease again
Critical recovery percentage: Chance of survival with no special medical treatment

Clone of SARS-CoV-19 model

Robert Hercock

Spring, 2020:

With the onset of the Covid-19 coronavirus crisis, we focus on SIRD models, which might realistically model the course of the disease.

We start with an SIR model, such as that featured in the MAA model featured in

https://www.maa.org/press/periodicals/loci/joma/the-sir-model-for-spread-of-disease-the-differential-equation-model

Without mortality, with time measured in days, with infection rate 1/2, recovery rate 1/3, and initial infectious population I_0=1.27x10-6, we recover their figure

With a death rate of .005 (one two-hundredth of the infected per day), an infectivity rate of 0.5, and a recovery rate of .145 or so (takes about a week to recover), we get some pretty significant losses -- about 3.2% of the total population.

Resources:

* http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA.nb

* http://www.nku.edu/~longa/classes/2020spring/mat375/mathematica/SIRModel-MAA-with-Flattening.nb

Key for Lab SIR 2 -- Coronavirus: A Simple SIR (Susceptible, Infected, Recovered) Model for Coronavirus

Andrew E Long

A sample model for class discussion modeling COVID-19 outbreaks and responses from government with the effect on the local economy. Govt policy is dependent on reported COVID-19 cases, which in turn depend on testing rates less those who recover

Assumptions

Govt policy reduces infection and economic growth in the same way.

Govt policy is trigger when reported COVID-19 case are 10 or less.

A greater number of COVID-19 cases has a negative effect on the economy. This is due to economic signalling that all is not well.

Interesting insights

Higher testing rates seem to trigger more rapid government intervention, which reduces infectious cases. The impact on the economy though of higher detected cases though is negative.

Clone of Burnie COVID-19 outbreak demo model version 2

lala Molawa

Here we have a basic SEIR model and we will investigate what changes would be appropriate for modelling the 2019 Coronavirus

Clone of SEIR Infectious Disease Model for COVID-19

Michał S

This is the first in a series of models that explore the dynamics of and policy impacts on infectious diseases. This basic model divides the population into three categories -- Susceptible (S), Infectious (I) and Recovered (R).

Press the simulate button to run the model and see what happens at different values of the Reproduction Number (R0).

The second model that includes a simple test and isolate policy can be found here.

Clone of Future Learn Basic SIR Model

kmolenda

This basic pandemic model explores the dynamics and healthcare burden associated with of a novel infection.

Clone of Pandemic: Exploring the Dynamics of a Novel Infection

Anni Chen

Overview:

The COVID-19 Outbreak in Burnie Tasmania shows the process of COVID-19 outbreak, the impacts of government policy on both the COVID-19 outbreak and the GDP growth in Burnie.

Assumptions:

We set some variables at fix rates, including the immunity loss rate, recovery rate, death rate, infection rate and case impact rate, as they usually depend on the individual health conditions and social activities.

It should be noticed that we set the rate of recovery, which is 0.7, is higher than that of immunity loss rate, which is 0.5, so, the number of susceptible could be reduced over time.

Adjustments: (please compare the numbers at week 52)

Step 1: Set all the variables at minimum values and simulate

results: Number of Infected – 135; Recovered – 218; Cases – 597; Death – 18,175; GDP – 10,879.

Step 2: Increase the variables of Health Policy, Quarantine, and Travel Restriction to 0.03, others keep the same as step 1, and simulate

results: Number of Infected – 166 (up); Recovered – 249 (up); Cases – 554 (down); Death – 18,077 (down); GDP – 824 (down).

So, the increase of health policy, quarantine and travel restriction will help increase recovery, decrease confirmed cases, decrease death, but also decrease GDP.

Step 3: Increase the variables of Testing Rate to 0.4, others keep the same as step 2, and simulate

results: Number of Infected – 152 (down); Recovered – 243 (down); Cases – 1022 (up); Death – 17,625 (down); GDP – 824 (same).

So, the increase of testing rate will help to increase the confirmed cases.

Step 4: Change GDP Growth Rate to 0.14, Tourism Growth Rate to 0.02, others keep the same as step 3, and simulate

results: Number of Infected – 152 (same); Recovered – 243 (same); Cases – 1022 (same); Death – 17,625 (same); GDP – 6,632 (up).

So, the increase of GDP growth rate and tourism growth rate will helps to improve the GDP in Burnie.

COVID-19 Outbreak in Burnie Tasmania - Lin Ling 523592

Lin Ling

3

Modelling of the SARS-Cov-2 viral outbreak using an SEIR model plus specific extensions to model demand for health and care resources.

The model includes biths and deaths, and migration to accommodate import and export of infected individuals from other areas.

Healthcare resources identifies need for hospital beds and critical care.

The model is uses arrays to reflect the different impacts of modelled parameters by age and sex.

Clone of Infectious Disease Model (Covid)

Michael F O'brien

This is the first in a series of models that explore the dynamics of and policy impacts on infectious diseases. This basic model divides the population into three categories -- Susceptible (S), Infectious (I) and Recovered (R).

Press the simulate button to run the model and see what happens at different values of the Reproduction Number (R0).

The second model that includes a simple test and isolate policy can be found here.

Future Learn Basic SIR Model

Bob Hawkins

12

Modelling of the SARS-Cov-2 viral outbreak using an SEIR model plus specific extensions to model demand for health and care resources.

The model includes biths and deaths, and migration to accommodate import and export of infected individuals from other areas.

Healthcare resources identifies need for hospital beds and critical care.

The model is uses arrays to reflect the different impacts of modelled parameters by age and sex.

Clone of Clone of Infectious Disease Model (Covid)

Chris Skelly

Modelo epidemiológico simples

SIR: Susceptíveis - Infectados - Recuperados

Clique aqui para ver um vídeo com a apresentação sobre a construção e uso deste modelo. É recomendável ver o vídeo num computador de mesa para se poder ver os detalhes do modelo.

Dados iniciais de infectados, recuperados e óbitos para diversos países (incluindo o Brasil) podem ser obtidos aqui neste site.

Clone of Modelo SIR simples - Covid 19

Evan Ananda Jati

SARS-CoV-19 spread in different countries

- please adjust variables accordingly

Italy

elderly population (>65): 0.228
estimated undetected cases factor: 4-11
starting population size: 60 000 000
high blood pressure: 0.32 (gbe-bund)
heart disease: 0.04 (statista)
free intensive care units: 3 100

Germany

elderly population (>65): 0.195 (bpb)
estimated undetected cases factor: 2-3 (deutschlandfunk)
starting population size: 83 000 000
high blood pressure: 0.26 (gbe-bund)
heart disease: 0.2-0.28 (herzstiftung)
free intensive care units: 5 880

France

elderly population (>65): 0.183 (statista)
estimated undetected cases factor: 3-5
starting population size: 67 000 000
high blood pressure: 0.3 (fondation-recherche-cardio-vasculaire)
heart disease: 0.1-0.2 (oecd)
free intensive care units: 3 000

As you wish

numbers of encounters/day: 1 = quarantine, 2-3 = practicing social distancing, 4-6 = heavy social life, 7-9 = not caring at all // default 2
practicing preventive measures (ie. washing hands regularly, not touching your face etc.): 0.1 (nobody does anything) - 1 (very strictly) // default 0.8
government elucidation: 0.1 (very bad) - 1 (highly transparent and educating) // default 0.9
Immunity rate (due to lacking data): 0 (you can't get immune) - 1 (once you had it you'll never get it again) // default 0.4

Key

Healthy: People are not infected with SARS-CoV-19 but could still get it
Infected: People have been infected and developed the disease COVID-19
Recovered: People just have recovered from COVID-19 and can't get it again in this stage
Dead: People died because of COVID-19
Immune: People got immune and can't get the disease again
Critical recovery percentage: Chance of survival with no special medical treatment

Clone of SARS-CoV-19 model

Tony Zambito

france data from:

France data [link], as of April 30

Incubation estimation [link]

Model focuses on outbreak dynamics and control, this version ignores symptom onset to hospital admission and the rest of recovery dynamics.

Clone of France COVID 19 outbreak control V2

Arpan Mitra

A simple ABM example illustrating how the SEIR model works. It can be a basis for experimenting with learning the impact of human behavior on the spread of a virus, e.g. COVID-19.

Clone of SEIR ABM MODEL

Pradeesh Kumar

COVID-19 Models